PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 1125827_671_892 (222 amino acids)

SeqID: 1125827_671_892 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>1125827_671_892
GFTYLFDGSDAQFANWEMAGGGSFSRFGRTIIAQQNEKGMGLLFYKPKPFEDFTLRLDFL
LPHPRGNGNDNSGVFVRFRDSRLPDPAPDPVDPADNAAFVAVHTGFEIQIDEEARGDTRF
GEPDGSFFARTGAIYKIKSLGTGEGQQNYQNNISLAARQWHHYEIEVKKQDYVVRLNGQE
VTRFKRSPSDTARGNPPSVDPNSGYIGLQTHTGNVAFANVRI