Running PSORTb v3.0 on 17640 FitnessBrowser__Keio:17640 (328 amino acids)
SeqID: 17640 FitnessBrowser__Keio:17640 Analysis Report: CMSVM- Unknown [No details] CytoSVM- Unknown [No details] ECSVM- Unknown [No details] ModHMM- Unknown [1 internal helix found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Periplasmic [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- Periplasmic [matched 586718: 2,3-diketo-L-gulonate-binding periplasmic protein yiaO precursor] SCL-BLASTe- Periplasmic [matched 100% 586718: 2,3-diketo-L-gulonate-binding periplasmic protein yiaO precursor] Signal- Non-Cytoplasmic [Signal peptide detected] Localization Scores: Periplasmic 10.00 CytoplasmicMembrane 0.00 Cytoplasmic 0.00 OuterMembrane 0.00 Extracellular 0.00 Final Prediction: Periplasmic 10.00 -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
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Predict transmembrane helices and signal peptides: Phobius
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>17640 FitnessBrowser__Keio:17640 MKLRSVTYALFIAGLAAFSTSSLAAQSLRFGYETSQTDSQHIAAKKFNDLLQERTKGELK LKLFPDSTLGNAQAMISGVRGGTIDMEMSGSNNFAGLSPVMNLLDVPFLFRDTAHAHKTL DGKVGDDLKASLEGKGLKVLAYWENGWRDVTNSRAPVKTPADLKGLKIRTNNSPMNIAAF KVFGANPIPMPFAEVYTGLETRTIDAQEHPINVVWSAKFFEVQKFLSLTHHAYSPLLVVI NKAKFDGLSPEFQQALVSSAQEAGNYQRKLVAEDQQKIIDGMKEAGVEVITDLDRKAFSD ALGNQVRDMFVKDVPQGADLLKAVDEVQ
Lawrence Berkeley National Laboratory