PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 200016 FitnessBrowser__MR1:200016 (454 amino acids)

SeqID: 200016 FitnessBrowser__MR1:200016
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Periplasmic                   [matched PS00123: ALKALINE_PHOSPHATASE Pattern - Periplasmic]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 17979023: Alkaline phosphatase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00
  Secondary localization(s):
    Cellwall              

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>200016 FitnessBrowser__MR1:200016
MSITKAPLLLLGMSLWLSSPTFAAEAGANETDPVKAPSRPKNIVIMIGDGMGPSYTSAYR
YYKDNRDTEEVEQTVFDRLLVGMASTYPASVSGYVTDSAAAATALATGVKSYNGAISVDT
QKQPLPTILEKAKSLGLSTGVAVTSQINHATPAAFLSHNESRKNYDALALSYLQTNADVF
LGGGQKYFSPELLAQFTSKGYQHITRFEELASISQPKVIGLFAEVQLPWAIDEKDAKKLS
TLTQKALNLLSQNEQGFVLLVEGSLIDWAGHNNDIAAAMGEMDEFANAIEVVEQFVRQNS
DTLMVITADHSTGGLSIGADGNYNWNPEILRNISASADTLAQAAISGDAWQADLSRGLGF
ALTEEETSKLSAARTQGAETLAVAIRYVIDKRTDTGWTTGGHTGMDVQVFAAGPASELFN
GHQDNTDIANKIFSLLPKPKKPKTPAPTTVQPQG