PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 200026 FitnessBrowser__MR1:200026 (1517 amino acids)

SeqID: 200026 FitnessBrowser__MR1:200026
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598087: geranyl-CoA carboxylase, alpha-subunit (biotin-containing)[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    8.46
    Cytoplasmic            1.33
    Periplasmic            0.21
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    8.46

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>200026 FitnessBrowser__MR1:200026
MTSNNQPKHMTQAQTPDPLFLQAEHLAKDFSLFPKHSKQSLSEEIKGLLNDDAIQANLKD
LASLDVDGYVAKVIQPTQDKGRPGAKRIIADLKGRLITETHLGSFYSAEVELNFGSRTRR
IGFIAQERTTANGAWMPEHHYAACKAIRHFAELSMPIVYLIDTPGADAGEVANSQNQAHS
ISKAIAESANVDVPTVGIVIGAGYSGGAIPLAAANILLSLRDGIFNTIQPQGLQSIARKY
NLSWQECAKSVGVSPEELYTSGCIDGIIDFSPGDRDERQHNLRRAIISSIEAVERAAVNF
VRESKDLREHYDRSLARFLNPSKNLMALELNAELAVATSPTNHHNLFGSAYRYLRYLTLR
SRIHSISQEQYGRLSRVSVPEGDLLARIQQEQDRVFQAWLASPDKLVYDEDLNKLWANFI
AKRDEISTERNMLTRFILGEPKENYKKARKALLFNISWSLYHRWKSNAANNFKGLIQHLE
NLPKSVTQAKWPELNQLTVLDVVVNDELREDFIWQCHNILIFNSLYDNVVGSLASIAKEA
MMSKSLSRNSVNNLLHKSIDHALSTQDTANDKAKFYKWLKYFMGQSNRADLLVRVEQWKS
VGFPQLNDSLFVILTYFFERLLPEYFDSESDHSKYTGAINPVRIGRRKDFWNRLTMGYQD
LLIQKVLRDEKRTGKMTWENVIKQFFTHFDEINGDKMSANLLNFPGFRLSIEDALDKGIR
PCGLITGIADFKEKGQKVRVGLAVSNTAFQAGAFDMASAEKFSALLIECAKRKLPVVCFI
SSGGMQTKEGAAALFSMAVVNDRITRFIRDNELPVLMFGFGDCTGGAQASFVTHPLVQTY
YLSGTNMPFAGQMVVPAYLPSTSTLSNYLSKVPGAMAGLVHNPFSENLDNQLASIDPLMP
MPTAKINEVIINALSTLVVEAPAEEEEIVQNDPRKLMKPINKVLVHARGCTAVKLIRKAH
DNNINVVLVASDPDMTAVPADMLKESDKLVCLGGNTSDESYLNAYSVLKVAEYEQVDALH
PGIGFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTSQAQNVPVVPGSHGILT
NAEQAVNVASEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGLFQKTATEAAAAFGNGDLYL
EKYVTSLRHIEVQLLRDKFGHAKVLGLRDCSVQRNNQKVVEESGSTMLPDELKKQVLAYT
RALGDATDYMGAGTVEFIYNLDANEVYFMEMNTRLQVEHPVTEATSGIDIVSAQFDIAAG
RSIEHLEPKEIGYAMEVRVTAEKAALDSHGVLQLIPNPGKITECVFPDHPDVEIISIAAP
GKEVSPYYDSLIAQVIMRGENREDVIAKLHAYLDSVVLKGIATNIPLLKLILSDGTFKEG
VYDTNYLPRFMAELDIPALIAEMEAAAETVGVDTESLRVGESNELKVLAQGAGIFYTSPA
PGEPDFVKEGDIVTAEQTLALTEAMKMFSQVNLAGFNRQGAVLYPEDKKYRIERILNSNG
QQVSQGDLLFVVSPVED

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory