PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 200227 FitnessBrowser__MR1:200227 (244 amino acids)

SeqID: 200227 FitnessBrowser__MR1:200227
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Periplasmic                   [matched PS01039: SBP_BACTERIAL_3 Pattern - Periplasmic]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 2507363: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Cytoplasmic            0.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>200227 FitnessBrowser__MR1:200227
MKKSMLLGGLTLTATLLLAGCGKSEDVLVVGTNAAFPPFEYVGGQSGDEIKGFDIELAKQ
IAKDAGKTLKVENMKFDSLIVALNSGKIDFIASGMTITPERQASVNFSEPYYEATQVLLV
NKDNESIHTLDDIKDKHFAVQLGSTADMMSKKYTQKVTAFNTGFEAIMELKNGKVDLVLF
DSEPAANYLAKNPDLKLIKLDFPPEFYGFAVSKQQPELLNSINHTLKNLKENGQYQALVS
AHIK