PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 200788 SO1623 PTS system, glucose-specific IIBC component (NCBI ptt file) (499 amino acids)

SeqID: 200788 SO1623 PTS system, glucose-specific IIBC component (NCBI ptt file)
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 67471695: PTS system glucose-specific EIICB component]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>200788 SO1623 PTS system, glucose-specific IIBC component (NCBI ptt file)
MAGKLESTRQIRARRLGHFVTQQWFKFAQRLSQALLIPIAILPAAGVMLGLTVSPIPFMP
EVLNVLMLAVGKLIFAIMPILFAVAVAIGFCRDQGIAAFTAVFGYGVMTATLAALADLYQ
LPTQLVLGMETLDTGIAGGMLIGGVTCFAVRWSQYIRLPAIFSFFEGRRSASLLIIPLAM
GLGYVLAHIWPSLSLLIERVSDWAVYQKPAIAFGVYGALERLLIPLGLHHIWNAPFYLEV
GQYQLQDAEVVRGEVARYLAGDPQAGNLAGGYLIKMWGLPAAALAIWRCADNSERNRVAG
IMLSAAAASWLTGVTEPIEFAFMFVAPLLFLIHVMLSGLAYFVCIMLDIHHSIVFSHGLV
DFTLLFSLSRNTGWFAVLGPLTAVIYYILFRGSILAFNLKTPGRLQSDGTKGSKESLRAI
IAALGGRDNIVELNACLTRLRLSVHSPELVNKVRLSQLGAKGVIVMGKGVQIVYGTKAET
LRKVLQRYLDTRRYEVNCR