PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 200919 FitnessBrowser__MR1:200919 (573 amino acids)

SeqID: 200919 FitnessBrowser__MR1:200919
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599943: phosphoglucosamine mutase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    Extracellular          0.01
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>200919 FitnessBrowser__MR1:200919
MNTHLQLQIQHWLKNDPDPSTQAQLQALIDSGNEAELAARFAGRLEFGTAGLRGVVGAGP
MGMNRLVIRQTSAGLGAYLLEQIHDVAERGVVIGYDGRHDSYTFAHDTASVLTAMGIKVR
LTAKVAPTPLVAFGVKHFNAAAGIVVTASHNPPQYNGYKVYWENGAQIIPPHDSGIAAKI
EQAATQAIPFMELDDAIKQGKLIWLNDDYYETYRRGVMHAKVLQNHTAPEKVSLAYTAMH
GVGADMAETVLKDAGFTQVYSVAAQREPDGDFPTVNFPNPEEKGAMDLVIAEAKKHSAML
ACANDPDADRFAVAVRKDDGEYQMLTGDQVGVLFGHYLLSHASADQRLVGTTIVSSSLLS
KIANGFGVESYTTLTGFKWLMNVGIAQSQPDNQFLFAYEEALGYTVGNMVWDKDGLSALV
AFAQLTAELAAKGQTIWDRLEQIYREQGFHLNAQASIALKPETPNIGAYLREHPPLTIGE
HAVVSTDDLKALSRRFADGKVENINLPASDVLTYRLSNGARVIVRPSGTEPKIKCYYEVV
EPMTAQDTLATAQARATQAMEAFISAHQASLPK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory