PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 201027 SO1865 ABC transporter, ATP-binding protein (NCBI ptt file) (302 amino acids)

SeqID: 201027 SO1865 ABC transporter, ATP-binding protein (NCBI ptt file)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 121397: Glutamine transport ATP-binding protein glnQ]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>201027 SO1865 ABC transporter, ATP-binding protein (NCBI ptt file)
MILVQCQGLSKHYGNKKALNNVSLTLEAGAPIALVGPNGAGKTTLFSLLCGYLTPSAGTV
RILGEAPNSPTLLGQIAALPQDATLDPNLTIISQLSFFARLQGMDSKQANQEALRVLNLV
DLAEVAQQKPPSLSHGMSKRVAIAQALIGSPKLVLLDEPTAGLDPANAKKIRELVRILSP
TTTFVISSHNLDELEKLCDQVLYLDKGELSQSISMRSSNSGSDYLTLTMQSCDSEALIQA
VGQIAGVVNITSKQAHVFVIQLDDTANRHYEFETALLALFKQQHWQYKMLLKGRTLEETL
FS