PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 201053 FitnessBrowser__MR1:201053 (218 amino acids)

SeqID: 201053 FitnessBrowser__MR1:201053
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597196: DhcB, dehydrocarnitine CoA transferase, subunit B[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>201053 FitnessBrowser__MR1:201053
MALSREQLAQRVAKELQDGYYVNLGIGIPTLVANYIPEGMEVMLQSENGLLGMGEFPTEE
TIDPDLINAGKQTVTAVKGASFFSSAESFAMIRGGHVDLTVLGAFEVDVNGSIASWMIPG
KLIKGMGGAMDLVAGAENIIVTMMHADKYGNSKLLPVCELPLTGYGCIKRVVTDLAFIEI
KDGAFHLLERAPGVSVEEIVSKTAGKLIVPDHVPEMVF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory