PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 201056 FitnessBrowser__MR1:201056 (694 amino acids)

SeqID: 201056 FitnessBrowser__MR1:201056
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597208: methylcrotonyl-CoA carboxylase, alpha-subunit (biotin-containing)[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>201056 FitnessBrowser__MR1:201056
MLTKQMLTNSMFTKLLIANRGEIACRIIKTAQAMGVRTVALYSDADKNARHVAMADESFY
LGGSAPADSYLKGDLIIAIAKKAQAQAIHPGYGFLSENADFARKCEAAGIVFVGPGSDAI
DAMGSKSAAKAIMTAAQVPLVPGYHGDDQTDATLKAEALKIGFPMLIKAAYGGGGKGMRI
VEHEGEIMDAINSARREAASSFGNDKLLMERYLRQPRHVEVQVFADTFGNAIYLSDRDCS
IQRRHQKVVEEAPAPGLSDELRAQMGEAAVAAAKAIDYVGAGTIEFLLDTDNSFYFMEMN
TRLQVEHPVTEMVTGQDLVKWQLMVASGQPLPLKQDEVRIHGHAFEVRIYAEDPQNEFLP
ASGKLNFLREPEQSKYVRIDSGIRENDVISNFYDPMIAKLIVWDESRPRALQRLVHALES
YQISGLKHNIEFLANIAEHPAFAKADFSTDFINRYGDALIGSASSEADTALAFAALYQVL
ARKEAAKAQAINSADPDSPWGQVSGFRLNSVSQHSIALLDDAHELQQLVLLDFGDHYQLS
HNRSSQHQLSQSAADGQVSKSLSGELKQDLLLAEINGHKSKVPVSAQGDDFTLFLPSGSY
HFRAVKTQVVEAESSNEDKLKAPMNGTVVTHLVDVGAEVKAGQGLLVMEAMKMEYTIEAP
FDGIVTEFYFKAGELVSDGAVLLHVEPKAQSEEA