PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 201539 FitnessBrowser__MR1:201539 (585 amino acids)

SeqID: 201539 FitnessBrowser__MR1:201539
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600213: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>201539 FitnessBrowser__MR1:201539
MNPYQAPLADMRFLLEQVFDAPNTWSQLPDIAEMVDMDTANAILEEAAKISAQLIHPLNR
AGDEQGVLHQDNCVITPEGYKAVYDQYSQGGWVGLCGEPEFGGMGMPKMLGVLVDEMAYS
ACNAFTLYGSLTAGAALCINAHGSEVLKQAYLPKLYSGEWAGAMDMTEPQAGSDLRNIRT
RAVPQEDGSYAISGSKIFITGGDHDLTENVIHLVLAKLPESKGISLFLVPKITVNKDGCL
GGTNGVSVGSIEHKMGLKGSATCVMNFDEAKGYLIGEPNRGLVCMFTMMNYERLAIGIQG
LGSAQAAYQMATDYAKERSQGVAAGGSPTGSDSDPIIVHGDVRRMLLTIRAMTEAGRALS
VFTGKQLDLAKYAQDDVKAKAARYVGLLTPVAKAFLTDRGLDATIMAQQVFGGHGYIRET
GVEQLVRDTRIAQIYEGTNGIQAIDFLGRKVTGDNLATLKEFVAELKAQMREFTQVDGVK
IAAVCARLDALVNVAESVNEQKLTQPALINACAVDFLDAFGYSVYGFYWLAMLDKVPSAE
DQNFAEQKAYLAKFYFDKLLPKADYHLAQVRAGDVSTMAMPAELF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory