PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 201906 FitnessBrowser__MR1:201906 (291 amino acids)

SeqID: 201906 FitnessBrowser__MR1:201906
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596773: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>201906 FitnessBrowser__MR1:201906
MAKVAFIGLGVMGYPMARHLLNKGHEVTVYNRTFAKAQTWVDTYGGRCCPTPKEAAIGQD
IVFTCVGNDNDLREVVLGDDGVIHGMALGTVLVDHTTASADVARELHKVLGEKGIDFLDA
PVSGGQAGAENGVLTVMVGGEQAVFERVKPVIEAFARCAERLGEVGAGQLTKMVNQICIA
GVVQGLAEALQFARKAGLDGEKVVEVISKGAAQSWQMENRYKTMWAQNYDFGFAVDWMRK
DLGIALEEARRNGSHLPLTALVDQFYSEVQAMGGNRWDTSSLLARFEKNTK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory