PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 202167 SO3048 isoquinoline 1-oxidoreductase, beta subunit, putative (NCBI ptt file) (748 amino acids)

SeqID: 202167 SO3048 isoquinoline 1-oxidoreductase, beta subunit, putative (NCBI ptt file)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118508: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.97
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>202167 SO3048 isoquinoline 1-oxidoreductase, beta subunit, putative (NCBI ptt file)
MSTFTAVENISRRDVLKLFGAVGGGLALGASGLSWSPMALAQDQQARLNLFIAIGEDDKV
YLTCHRSEMGQGIRTGILQILAEELEADWDKIVPIQGLADKRYASQNTDGSRSIRENYDR
MREMGAMARTMLEQAAAARWKVPVTEVQAKDHKVMHAKSGRSARFGELALDAAALPLPAA
DSLRLKAVKDFKQIGASRQIVDMQAMLTGKAVYGYDIQVDNMLYASIVRPPVLGSDVASL
DDTAARKVQGVVDVYRLPTPKGAPAFQALGGVAVVATNTWSALQGRKALKVTWTQSANSS
HDSKTYLQELVDKVQAPGKVVRQVGDEVKAWPEANTLKAIYTVPYLIHSSIEPPVATANV
TEKGCEIWASTQTPQSTQQNVAAALGIAEDAVKVNVTLLGGGFGRKSKPDFSVEAALLSK
QLKRPVKVSWSREDEIQNGYYHAISAQCYQALFDTNNQPTALLARTGFPSISSTFAEGVE
YPSDGELDLGFVDVPFALPHLRYEAVKATAHSRIGWMRSVCNIQHGFGVGSFVDEMAHKA
QLSCPDMWRSLLGQPRRETFDNQGFKYGNYGEELTRHPVDIGRYLKVIEAVEQAQAKAPK
AGKNQGWGFAVHRSFVSVVAVAMRVEVSEDKQLKVLNAIAAIDAGTVVNPDRVKAQTEGA
IVFGLSLALMGEISYQEGKVVQSNFHDYPLLRLPQVPEIEIIIIDSDAPPAGVGEPGVPP
VAPSLTNAIFAATGVRIRDLPVNKQLKV