PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 206130 MicrobesOnline__882:206130 (156 amino acids)

SeqID: 206130 MicrobesOnline__882:206130
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [4 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 586716: 2,3-diketo-L-gulonate TRAP transporter small permease protein yiaM]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>206130 MicrobesOnline__882:206130
MEPTKKQPARIERALAALVMAALTLITGANVVMRYCTNVSFAMTEEVSVFLLMVLTLVGA
VSAFAEGRHVRITLFVNSLPDTGRKVCNALAWMCNVAMFGMLTWLAALVAWDDYSFEVTS
PALGVPQWWYSGWLPLAAAVIVLRLVLMLFQRRGKA