Running PSORTb v3.0 on 207299 MicrobesOnline__882:207299 (1234 amino acids)
SeqID: 207299 MicrobesOnline__882:207299 Analysis Report: CMSVM- Unknown [No details] CytoSVM- Cytoplasmic [No details] ECSVM- Unknown [No details] ModHMM- Unknown [No internal helices found] Motif- CytoplasmicMembrane [matched PS00449: ATPASE_A Pattern - Cytoplasmic Membrane] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- Cytoplasmic [matched 15600629: probable biotin carboxylase subunit of a transcarboxylase[Pseudomonas aeruginosa PAO1]] SCL-BLASTe- Unknown [No matches against database] Signal- Unknown [No signal peptide detected] Localization Scores: CytoplasmicMembrane 5.95 Cytoplasmic 4.05 Periplasmic 0.01 Extracellular 0.00 OuterMembrane 0.00 Final Prediction: Unknown (This protein may have multiple localization sites.) -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in the ENIGMA genome browser
>207299 MicrobesOnline__882:207299 MAIKTFEQVMEEVRGKAILVANRGIPARRICRSIRERFDAVAVMTATDVDKTSPAASAAQ ELLLLGADPRAYLDIDRIISLAKQRGVVAIHPGWGFASEDDRFPSKCHEAGLTFIGSTAE AMNLLGNKVQVRKLARKLGVPVVPGSEGAVDIPTARKLIDEIGLPIMLKAEGGGGGRGIF AIRDESELDDAFFKASTMAQASFGNPRLFVEKYLESVRHIEIQVIADMYGNAFAFDERDC SIQRNHQKLIEITPSPWPGITPELREKLKEYSKMLVREVGYHSLATVEFLVTASGEAYLI EVNTRLQVEHGITECRYGIDLVEEQIAVAFGAQLRLTEENTKPVHHAMQVRINCEDPQAG FSPNSGLVSRYVSPGGPGVRLDSNMCAGYEFPPNYDSAGSLLITYGQGWQKVLGIMERCL SEYIIGGLKTTIPFYKQVMKHPRFRAGDFDTNFIAETPELMCYTDLAPEGERLARLVAEI SAKGFNPYVQLGEYRTRETPRMPKFEPVLPHIPGQVRRNPSPYPHGDRGALLDYLRDAGH VHFTDTTARDITQSNSGNRFRLAEDALMGPYLDNCNFFSLENGGGAHFHVAMMANMTYPF SEAAEWNKFAPKTLKQILIRSTNVLGYKPQPRNLMRITGEMICEHYQVIRCFDFLNHVEN MRPFAEVALNRNDVVFEPALSLSWARGFDVAHYVGVTEAILRMVGDVAGFGPEQASRSII LGLKDMAGVCPPRFMTELVSTLRKRWPSLVLHCHRHYTDGLFVPAVGAAAKAGAHIVDTA IGASVRWYGQGDVLSMAAYLEDELGLRTNLNKTMIRDCNFVLKQVMPFYDRYCAPYFQGI DYDVVEHGMPGGATSSSQAGAMKQGYIHLLPYMLKFLAGTRKIVRYHDVTPGSQITWNTA FLAVTGAHKRGGEDEVRYLLEVLDNVTRHPESDLSEDMKKARLAIYQDCNDAFRDLLLGK FGRLPLGFPDEWVYRSAFGNEWRKAMASRTEASPLDSLAPVDLALEERGFIDIVRRKPTE EEFVMYLNHPGDAIKTIQFKARFGNANNLPLDVWFEGLQPGEELNFTDSSGKPHHLVILS ISRPNDAGYSVIRYVLDSEIMSCEAQVKQSSVADIKGVEMADRANPMHVAAPSNGDLWVM YVHPGDVVKKGEELFNVSIMKQEKAVLAPMDAMVKRVLKTADYRESKQMVAVREGELVVE LCPIPKMCPNHACGHPITLDGIDFCPYCGERLDA
Lawrence Berkeley National Laboratory