PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 207406 MicrobesOnline__882:207406 (265 amino acids)

SeqID: 207406 MicrobesOnline__882:207406
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 20141694: Glycine betaine/L-proline transport ATP-binding protein proV]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>207406 MicrobesOnline__882:207406
MSHASDPKKAGAHGDKSLVVEHLRKEYVRGKAVLKDISFTVSGQSTTAIIGPSGTGKSTL
LRCINRLIEPTAGRILVSGEDVCALKGTALREARRRIGMVFQEYNLVERLSVMENVLCGR
LGYISPWRAWLRKFPQEDIDRAFDLLDMVGLADFARARADELSGGQRQRVGIARAVMQEP
HILLADEPTSSLDPKTSVEIMELLRAVAEKRDIPVLVNIHDVTLGRRFSDRVIGMCKGEV
LFDDVPSALQDDHLKQIYGGEEWLQ