PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 207560 MicrobesOnline__882:207560 (480 amino acids)

SeqID: 207560 MicrobesOnline__882:207560
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2632690: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>207560 MicrobesOnline__882:207560
MWLPLDVDGPLSLGRQLYERLKQMILDGELAAGARLPSSRALAVELGVSRNTVLDAYDQL
SAEGYLETRHGSGTRVAAGIVSERGEGGANRAPFVIAPAAVPERPSGVVSFRSGIPALDV
FPREEWARTYQRVCAALPDDALRYSAPAGVWALREAIAGYLRRTRGIRCHAERVMITSGA
TQGLRIMSRLLQRSGGVVLAEDPAHAGLREVLEVTGLRVEGVPVDDRGMDTGMLPSAEEA
RRAGVAFVYVTPSHQYPLGGILPVQRRQALVRFAREAECLIVEDDYDGEFRHEGSPVGTL
HELAPESVVYLGSFSKVLAPALRLGFAILPARLLAAWHREKLYSDVHTDALSQHALASFI
GSGALERHIWRMKKLYRRRRAFLVKSLMRHFGDAVGIRGHATGLHLVAAFTGVRFDDKVM
SELARGGVEATPVHAYALQHGDDHVNELILGYAHLSEEAMEQGVRLLKQVLGNAGRVPVG