PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 207874 MicrobesOnline__882:207874 (343 amino acids)

SeqID: 207874 MicrobesOnline__882:207874
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [5 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 465611: Inner membrane ABC transporter permease protein yejE]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>207874 MicrobesOnline__882:207874
MTTAQRRWNAFRRNGRAWWSLVFFVTLFCLSLCAEIIANDRPLLVMVHGRLHSPVLHDYT
ERDFGGEFDTPADFRDPLLTAYIDAHGWALWPPVRFADATINYDAPAVPAPPGGGNWLGT
DDQGRDILARLLYGFRLSVLFGLALTLAGSVTGIAAGAVMGYRGGRLDLFGQRILEIWSG
IPVLYLLMLVGSMFRMTFWTLLGVMLLFGWMRLVPAVRTEFLRGRNLDHVRAARALGVPQ
WRIMLRHVLPNAMVAVVTFLPFQLNGSIVALTSLDFLGFGLPPGYPSLGELVAQGRANLH
APWIGCSVFGLLGGTLMLLVFIGEGVRDALDPSVTNPAPSPRR