PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 209017 MicrobesOnline__882:209017 (495 amino acids)

SeqID: 209017 MicrobesOnline__882:209017
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [13 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50283: NA_SOLUT_SYMP_3 Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1172008: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>209017 MicrobesOnline__882:209017
MSAQFMTTVPVVLYLALSFGVALWARGRTAEGGSAKDIIEEYYIGGRSMGGFVLAMTIIA
SYTSAGSFVGGPGVAYRLGLSWVLLAMIQVPTTFLTLGVLGKRFAIVARRAGAVTLTDYL
LARYRSHTVVILCSAALLVFFMAAMLAQFIGGARLFQTVTGYPYVVGLALFGVTVVLYTA
VGGFRAVVVTDAVQGIVMVVAVVVVLLAVIDAGGGMTQCIATLKAIDPGLITPTGPGDAV
PQPFMLSFWVLVGLGVLGLPQTTQRCMGYRDSRAMHDAMIIGTLLIGFMILCAHLAGTLG
RAVLPDLPAGDLAMPSLIVQLLSPFWAGVFIAGPLAAIMSTVDSMLLLASAAIVKDLYVR
YRLGGDTSRLRPVTMKRMSVASTAVIGVLVFVAAMEPPDLLVWINLFAFGGLEAVFLWPL
VLGLYWRRGNATGAIASILSGVTAFVWLTIAKPDMGGIHAIVPTTLLSLVMFVAGSLAGR
PSGREVDALFGGERS