PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 209026 MicrobesOnline__882:209026 (295 amino acids)

SeqID: 209026 MicrobesOnline__882:209026
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 130689: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>209026 MicrobesOnline__882:209026
MAKRNAFRNASIAVVALWLGLFALLPNAGLLLVTVLQRGEQDFVEPVFTLANYARLFDPT
FLRILWDSIALAATSTFVCLLVGYPFAYRIAMARRSVRPWFLLLVIIPFWTNSLIRTYAL
IILLKSQGLVSDVLLFLGFIDAPISLMYSDLAVFVGLTYTLLPFMILPLYVSIDKLDRKL
LDAAKDLGAGSLRAFWHVTLPLTMPGIVAGSMLVFLPSLACFYIPEILGGAKAMLIGNFI
KNQFLVARDWPLGAAASTILTLLLVLLIVAWWLASRRVAAREKHEQDAALFTEAG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory