PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 209094 MicrobesOnline__882:209094 (1077 amino acids)

SeqID: 209094 MicrobesOnline__882:209094
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            OuterMembrane                 [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599950: carbamoyl phosphate synthase large subunit [Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            7.80
    CytoplasmicMembrane    0.85
    Extracellular          0.69
    OuterMembrane          0.66
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            7.80

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Other sequence analysis tools

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Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>209094 MicrobesOnline__882:209094
MPKRTDLKRIMVIGSGPIIIGQACEFDYSGTQAVKALKEEGYEVVLVNSNPATIMTDPGL
ADRTYIEPIEPETVAAIIRKERPDALLPTLGGQTGLNTALALAASGVLDECGVELIGANR
AVIEKAESRELFRLAMANIGLKVPASGIARSMDDVRRLGTEMPFPLIIRPAFTMGGTGGG
IAYNMEDLEEIASRGLTASITSEVMIEQSVLGWKEYEMEVMRDKADNCVIICSIENFDPM
GVHTGDSITVAPAQTLTDVEYQMMRDASIAIMREIGVETGGSNVQFGINPDNGDMVVIEM
NPRVSRSSALASKATGFPIAKIAAKLAVGYTLDEIPNDITRETMASFEPTIDYVVTKIPR
FTFEKFPGARDELTTAMKSVGEAMSIGRTFKESLQKGLRSLEVGAPGLGSRFRDKLPEHE
EIVAKLRTPNSRRIFYVRLAMLSGMTIDDIHEITNIDPWFLRQMRELVDMEGDLRDFALA
NSMTPDNGELVTLLRRAKEYGFSDRQLAEMWKRPESDVRALRDATGIRPTYYLVDTCASE
FEAYTPYYYSTYETGHEIEAESRRKVIILGGGPNRIGQGIEFDYCCCHASFALKEMGVQA
IMVNSNPETVSTDYDTSDRLYFEPLTFEDVMHIIEAEKPDGVIVQFGGQTPLNLAVPLQR
AGVPILGTSPDAIDRAEDRERFQALIHKLDLRQPANATVMNLRQAIAGANSIGYPVVVRP
SYVLGGRAMEIVYDEEQLTSYFQNSVGEAPEHPILLDKFLENATEVDVDALSDGTDVYVA
GIMEHIEEAGIHSGDSACSIPPYSLPSSITDEISRQTVALAKELRVVGLMNIQFAVKDGV
IFILEVNPRASRTAPFVSKATAVPLPRLATQVMLGKTLKELDPWSMRRSGYVSVKESVFP
FNRFPGVDILLGPEMRSTGEVMGIAPTFEEAYLKGQLAGGQRLPQQGKVFISVNDRDKTL
VPDVARIFADLGFEIVATAGTAKLLKEHGVPTTHVNKVYEGRPNIVDMIKNGDIALVVNT
ASGKRTVQDSKSIRQATLMYGVPYSTTVSGARAIAKSIAASRTCGVNVKSLQEYYGL