PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 209253 MicrobesOnline__882:209253 (341 amino acids)

SeqID: 209253 MicrobesOnline__882:209253
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598533: ADP-L-glycero-D-mannoheptose 6-epimerase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>209253 MicrobesOnline__882:209253
MSTFDSVLQDINASPRTWLVTGVAGFIGSNLLETLLRQGQRVVGLDNFLTGYQRNLDMVR
DLVGEERWASFRFIEGDIRDLATCHEACKGVDHVLHQAALGSVPRSIDDPILSNECNITG
FVNMLVAARDAGAKSFVYAASSSTYGDEPTLPKVEDIIGKPLSPYAVTKYVNELYADVFA
RCYGFTAIGLRYFNVFGQRQDPFGAYAAVIPQWFASLLRGETVFVNGDGETSRDFCYIDN
VVQANILASLAPAEARDKVYNVAFGQRTTLNELFDLIREEVVRHKPEAAGATCVHRDFRA
GDVRHSLADITRAQTLLGYAPVYDVREGLRLAGDWYAANLK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory