PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 209357 MicrobesOnline__882:209357 (290 amino acids)

SeqID: 209357 MicrobesOnline__882:209357
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>209357 MicrobesOnline__882:209357
MTDSPHKRFLASELDDIAPEEARFHVIPAPFEASVSYGGGTGAGPDAILDASDQLELWDG
LSIPAAQGIHTHPPVDCTGDAEAVLDRISRATRSVLDAGGTPVLLGGEHTVTYGALAALR
ERFGRFGVVQFDAHADLRDSYEGSRWSHASVMRRAVSDLGLPLVQYGVRALCTEEVAFRR
EAGVTHWDAAQLARSGVPARPLPDDFPESVYVTFDVDGLDPSIMPATGTPVPGGLGWYDA
LRLVERSVSGRRVLGFDVVELAPIAGWHAADFAAARLVYDIMGIIQRMAR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory