PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 2629598296 IMG__TrieryIMS101_FD:2629598296 (1224 amino acids)

SeqID: 2629598296 IMG__TrieryIMS101_FD:2629598296
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597040: methionine synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>2629598296 IMG__TrieryIMS101_FD:2629598296
MLSVEIPKPQLKTSFLQRLQSPDRPVLIFDGAMGTNIQSQNLTAEDFGGAEYEGCNEYLV
VTKPEAVAKVHRDFLAAGADVVETDSFGSSPLVLAEYNLADRAYELSRKAAELARSCADE
FTSPEKPRFVAGSIGPGTKLPTLGHITYDELKASFMVQAEGLYDGGADLFIVETCQDVLQ
IKAALSAFEAVFAKKGSRLPLMVSVTMEIQGTMLVGTDISGVLAILEPFPIDILGLNCAT
GPNLMTSHIKYLSENSPFPISCIPNAGLPENIGGQAHYKMTPLEFKTSMSEFIGQYGVQI
VGGCCGTRPAHIQALADAVEETPLKERSVRKNAVGKVRTPLSYTPAAASIYSAQTYEQDN
SFLIVGERLNASGSKKVRKLLNEDDWDGLLAIAKSQVKEGAHMLDVNVDYVGRDGERDMR
ELVSRLVTNTTLPLMLDSTEWTKMEAGLKVAGGKCLLNSTNYEDGEERFFKVLELAKEYG
AGVVIGCIDEEGMARTAKKKFEIAQRAYKDALKFGIPPHEIFYDTLALPISTGIEEDREN
AKATIESIRLIRENLPGVHFMLGVSNISFGLSPATRITLNSIFLNEAMKAGMDGAIVSAA
KILPLSKIDEEHQQICCDLIYDNRKFEGDICTYDPLTKLTEIFAGVSAKDARSGPSLADL
PIDQRLKQHIIDGERIGLEDALKVALDAGHKALEIINTFLLDGMKVVGELFGSGQMQLPF
VLQSAETMKSAVAFLEPYMEKIEGEDEDRGKGKFLIATVKGDVHDIGKNLVDIILTNNGY
KVINLGIKQAIEAIVEAYEQHKPDCIAMSGLLVKSTAFMKENLAAFNAKGITVPVILGGA
ALTPKFVYGDCQDTYQGQVIYGKDAFADLTFMDRLMPAKDKDCWVDTEGFTGEFAQFNQR
GRKAIKDLERELNGDGEKSDGEVNGNGKKPNKPTVIDTKRSTDVAIDIERPAPPFWGTKI
LQSGDLKLEELFWYMDLQALFAGQWQFRKPKGQPREEYDWFLASKVYPILEEWKQKVRTE
QWLEPTLVYGYFPCAAIGNSVHVYDPSVIEQGLTPTTATPFVTWTFPRQKSMRRLCIADF
IRPLEHDQFDVLPMQAVTMGEIATQKAQELYQGNEYTNYLYFHGMAVQLAEALAEWSHAR
IRRELGYGDLEPDNIRDILAQRYQGSRYSFGYPACPVVIDQVPQLQLLGADRIGVSIDES
EQLYPEQTTTAFVIYHPVARYFSA