PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 2629599010 IMG__TrieryIMS101_FD:2629599010 (172 amino acids)

SeqID: 2629599010 IMG__TrieryIMS101_FD:2629599010
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599889: acetolactate synthase isozyme III small subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>2629599010 IMG__TrieryIMS101_FD:2629599010
MKHTLSVLVEDEAGVLTRIAGLFARRGFNIESLAVGPAEQTGVSRITMVVPGDNGIIEQL
TKQLYKLVNVLKVHDITAAPCVERELMLLKINATTSMRSEVIEIATIFRARVVDVGEDSL
TIEVVGDPGKMVAIVQMLSKYGIREIARTGKIALTRESGVNTEFLKLQTSEV