PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 2629601377 IMG__TrieryIMS101_FD:2629601377 (326 amino acids)

SeqID: 2629601377 IMG__TrieryIMS101_FD:2629601377
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595596: cystathionine beta-synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>2629601377 IMG__TrieryIMS101_FD:2629601377
MDIKPGFIGTVGNTPLIRLNSFSEETGCEILGKAEFLNPGGSVKDRAALYIIKDAEEKGL
LKPGGTVVEGTAGNTGIGLAHICNAKGYKCLIVIPETQSVEKMDALRTLGAEVKPVPAVP
YKNPNNYVKMSGKLASTIENAIWANQFDNLANRIAHYETTGPEIWEQTDGKVDAWVAATG
TGGTFAGVSLFLKEKNPQIKTVLADPMGSGLYSYVKTGEISSEGNSITEGIGNSRITKNM
ENVMIDDAIRVDDKEAVRVVYQLLRKDGLFMGGSVGINVGAAVALAKQMGPGHTIVTVLC
DSGTRYQSKLFNREWLATKNLLPDER