PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 349989 FitnessBrowser__Btheta:349989 (839 amino acids)

SeqID: 349989 FitnessBrowser__Btheta:349989
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.84
    Extracellular          0.14
    CytoplasmicMembrane    0.01
    OuterMembrane          0.01
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.84

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Other sequence analysis tools

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Predict transmembrane helices and signal peptides: Phobius

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Input

>349989 FitnessBrowser__Btheta:349989
MTINIRYLLGIALLFSFSVISAQVRTSYTFEKGWKFTREDNADFIQPDYNDIKWQSVVVP
HDWAIYGPFGIDNDRQLTAIAQDGQKEAMEHAGRTGGLPFVGVGWYRLNFDAPSFVKGKK
ATLIFDGAMSHARVYINGQEAGYWPYGYNTFYLDVTPYLKEGTKNTLAVRLENETESSRW
YPGAGLYRNVHLVVTEDAHIPTWGTQLTTPVVKDDYAKVNIKTTLVVPSGKQFDAYRIVT
ELKDKDGKVVTTDEKQGSRFDDNIFSQELVVSRPALWSPETPVLYQAVSKVYEGNILKDE
YTTSFGIRTIEVIPNKGFFLNGKRTSFKGVCNHHDLGPLGGAVNDAAIRRQIRILKDMGC
NAIRTSHNMPAPELIRACDEMGMMVMAESFDEWKAMKVKNGYRHVFDEWAVKDLTNLLRH
YRNNPSVVMWCIGNEVPEQWDGNKGPKMSYFLQELCHREDPTRPVTQGMDAPDAVVNNNM
AAVMDIAGFNYRPHKYQENYKKLPQQIVLGSETASTVSSRGVYKFPVTRQWMKKYDDHQS
SSYDVESCSWSNLPEDDFIQHEDLPYCIGEFVWTGFDYLGEPTPYYTDWPSHSSLFGIID
LAGLPKDRYYLYRSHWNKEQETLHILPHWNWEGREGEITPVFVYTNYPSAELFINGKSQG
KRTKDLSVTIDNSADSVSIMNLKRQSRYRLMWMDTKYEPGTVKVVAYDADGKAVAEKELH
TAGKPDHIELVADRNVIKADGKDLSFVTVRVVDRDGNLCPDASHEISFKVKGEGSYRAGA
NGNAASLESFQHPKMKVFSGMMTAIVSSTEQPGKITLEATGKGLKKGALIIESCQEAKK