PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 350063 FitnessBrowser__Btheta:350063 (381 amino acids)

SeqID: 350063 FitnessBrowser__Btheta:350063
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 462590: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>350063 FitnessBrowser__Btheta:350063
MENFIFQNPVKLIMGHGMIARLSKEIPSDKRIMITFGGGSVKKNGVYDQVKEALKDHFTI
EFWGIEPNPAIETLRKAIALGKEQKVDYLLAVGGGSVIDGTKLISAGLLYDGDAWDLVLA
GRPVTKTVPLSTVLTLPATGSEMNNGAVISRHETKEKYPFYSNFPLFSILDPEVTFTLPP
HQVACGLADTFVHVMEQYMTVAGQSRVMDRWAEGILQTLVEIAPKIRENQHDYQLMADFM
LSATMALNGFIAMGVSQDWATHMIGHEITALHGLTHGHTLVIILPATLRVLREAKGDKLV
QYGERVWGITSGTKEERIDEAIDRTEEFFRSLGLTTRLHEENIGEETVLEIERRFNERGA
KYGENENVTGAVARKILEAAL