PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 350320 FitnessBrowser__Btheta:350320 (497 amino acids)

SeqID: 350320 FitnessBrowser__Btheta:350320
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16077994: glycerol kinase [Bacillus subtilis subsp. subtilis str. 168]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>350320 FitnessBrowser__Btheta:350320
MFLLGYDIGSSSVKASLVNAETGKCVSSAFFPKTEAKIIAVNPGWAEQDPESWWENLKLS
TQAIMAESGVSAAEIKAIGISYQMHGLVCVDKNQQVLRPAIIWCDSRAVPFGQQAFETIG
EERCLSHLLNSPGNFTASKLAWIKQNEPAVYEQIYKIMLPGDYIAMKLSGDICTTVSGLS
EGMFWDFKNNRVADFLMDYYGFDSSLIADIKPTFAEQGRVNAVAANELGLKEGTPITYRA
GDQPNNALSLNVFNPGEIASTAGTSGVVYGVNGEVNYDPQSRVNTFAHVNHTMEQTRLGV
LLCINGTGILNSWVKRNIAPEGISYNEMNVLASKAPIGSAGISILPFGNGAERMLNNKEI
GCSIRGVDFNAHGKHHIIRAAQEGIVFSFKYGIDIMEQMGIPVKKIHAGHANMFLSSIFR
DTLAGVTGATIELYDTDGSVGAAKGAGIGAGIYKDNNEAFATLDKLDVIEPNIAKRQEYA
DAYARWKYNINNDIITF