PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 350351 FitnessBrowser__Btheta:350351 (468 amino acids)

SeqID: 350351 FitnessBrowser__Btheta:350351
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>350351 FitnessBrowser__Btheta:350351
MKNFMDENFLLQTETAQKLYHEHAAKMPIIDYHCHLIPQMVADDYKFKSLTEIWLGGDHY
KWRAMRTNGVDERYCTGKDTTDWEKFEKWAETVPYTFRNPLYHWTHLELKTAFGIDKILS
PKTAREIYDECNEKLAQPEYSARGMMRRYHVEVVCTTDDPIDSLEYHIQTRESGFEIKML
PTWRPDKAMAVEVPADFRAYVEKLSAVSGVTISNFDDMIAALRKRHDFFAEQGCRLSDHG
IEEFYAEDYTDAEIKAIFNKVYGGAELTKEEILKFKSAMLVIFGEMDWEKGWTQQFHYGA
IRNNNTKMFKLLGPDTGFDSIGEFTTAKAMSKFLDRLNVNGKLTKTILYNLNPCANEVIA
TMLGNFQDGSIAGKIQFGSGWWFLDQKDGMEKQMNALSVLGLLSRFVGMLTDSRSFLSYP
RHEYFRRTLCNLVGRDVENGEIPVSEMDRVNQMIEDISYNNAKNFFKF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory