PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 350400 FitnessBrowser__Btheta:350400 (587 amino acids)

SeqID: 350400 FitnessBrowser__Btheta:350400
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Cytoplasmic                   [matched PS50862: AA_TRNA_LIGASE_II Profile - Cytoplasmic ]
    SCL-BLAST-        Cytoplasmic                   [matched 46577253: Aspartyl-tRNA synthetase]
    SCL-BLASTe-       Cytoplasmic                   [matched 100% 46577253: Aspartyl-tRNA synthetase]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            10.00
    OuterMembrane          0.00
    Extracellular          0.00
    Periplasmic            0.00
    CytoplasmicMembrane    0.00
  Final Prediction:
    Cytoplasmic            10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>350400 FitnessBrowser__Btheta:350400
MFRTHTCGELRISDVNKQITLSGWVQRSRKMGGMTFIDLRDRYGITQLVFNEEINAELCD
RANKLGREFVIQITGTVNERFSKNANIPTGDIEIIVSELNVLNTAMTPPFTIEDNTDGGD
DIRMKYRYLDLRRNAVRSNLELRHKMTIEVRKYLDSLGFIEVETPVLIGSTPEGARDFVV
PSRMNPGQFYALPQSPQTLKQLLMVSGFDRYFQIAKCFRDEDLRADRQPEFTQIDCEMSF
VEQEDIISTFEGMAKHLFKTLRGVELTEPFQRMPWADAMKYYGSDKPDLRFGMKFVELMD
IMKGHGFSVFDNAAYVGGICAEGAATYTRKQLDALTEFVKKPQIGAKGMVYARVEADGTV
KSSVDKFYTQEVLQQMKEAFGAKPGDLILILSGDDVMKTRKQLCELRLEMGSQLGLRDKN
KFVCLWVIDFPMFEWSEEEGRLMAMHHPFTHPKEEDIPLLDTDPAAVRADAYDMVVNGVE
VGGGSIRIHDAQLQARMFEILGFTPEKAQAQFGFLMNAFKYGAPPHGGLAYGLDRWVSLF
AGLDSIRDCIAFPKNNSGRDVMLDAPSEIDQTQLDELNLIVDIKENK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory