PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 350805 FitnessBrowser__Btheta:350805 (438 amino acids)

SeqID: 350805 FitnessBrowser__Btheta:350805
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 120593: L-fucose-proton symporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>350805 FitnessBrowser__Btheta:350805
MKHTKQSIISKDGVSYLIPFILITSCFALWGFANDITNPMVKAFSKIFRMSATDGALVQV
AFYGGYFAMAFPAAMFIRKFSYKAGVLLGLGLYAFGAFLFFPAKMTGEYYPFLIAYFILT
CGLSFLETSCNPYILSMGTEETATRRLNLAQSFNPMGSLLGMYVAMQFIQAKLHPMGTDE
RALLNDSEFQAIKESDLAVLIAPYLIIGLVILAMLLLIRFVKMPKNGDQNHKIDFFPTLK
RIFTQTRYREGVIAQFFYVGVQIMCWTFIIQYGTRLFMSPEYGMDEKSAEVLSQQYNIVA
MVIFCISRFICTFILRYLNAGKLLMILAIFGGIFTLGTIFLQNIFGLYCLVAVSACMSLM
FPTIYGIALKGMGDDAKFGAAGLIMAILGGSVLPPLQASIIDMKEIASMPAVNVSFILPL
TCFLVIIGYGYRTVKRNW

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory