PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 350965 FitnessBrowser__Btheta:350965 (377 amino acids)

SeqID: 350965 FitnessBrowser__Btheta:350965
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596249: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>350965 FitnessBrowser__Btheta:350965
MKKVVVAMDFFKGCLSSSEVEKAVEEGIKLVCPDCEVIRFPIADGGEGILTVLVEATRGT
YQKIIANDPLMRPIETTYGVSGDKRVAFIEMATVNGLPLLSETERNPMLTTTYGTGELIL
HAIEQGYREFVIGIGGSATNDAGVGMLQALGARFLNKDGAVLGEGGEILHRIAAIDFSSV
HPALEDTRFTIACDVRNPFCGPEGAAHVFARQKGADDAMIEKLDAGMQSFSRLIHSTTGR
EITHVPGAGAAGGLGGAFLAFLNAELKPGIDLLLQTLKFSEKIKGADLIITGEGRTDRQS
LMGKVPSGILEEAKRQGIPVIVVAGSIEDTEILNQAGFQGLFSIIPSPMSLETAMKPEVA
KKNICRTVAQIISLVNL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory