PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 351634 FitnessBrowser__Btheta:351634 (386 amino acids)

SeqID: 351634 FitnessBrowser__Btheta:351634
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>351634 FitnessBrowser__Btheta:351634
MKNKSKILPVLFGFFIMGFCDLVGVSVTYAKDYFSWSETQAGFLPSMVFIWFLLISIPIS
IWMDKKGRKTISLIGLLSTFIGMLLPLLTFTQTACYIAFALLGIGNTILQVSLNPLLTNV
IAEGKLSSIMTAGQFIKALSSFVGPIVAGFCSVYFNNWILMFPIFAAITLISGIWLFFTP
INEKDDKRLTSSFYQVISLLKNKTICLLFGGIICIVGLDVGMNVFTPKLLIENAELTKEI
ASYGTSWYFAARTLGTLCGVILLAKFSEIYYYRINMFIVLIALSCIYWIHSQYIILLLVC
IIAFAMSSIFAVIYSLALHTLPYKTNEISGLMITGISGGSIIPPLMGVCADYTESQSGSI
LVMLICVIYLILCSFHKFKTIHTKPH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory