PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 352996 FitnessBrowser__Btheta:352996 (449 amino acids)

SeqID: 352996 FitnessBrowser__Btheta:352996
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Periplasmic            2.50
    Extracellular          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>352996 FitnessBrowser__Btheta:352996
MKKNFLFTLLLFCAASLSAQTWEPLFNGKNLKGWKKLNGKAEYKIVDGAIVGISKMGTPN
TFLATTKNYGDFILEFDFKIDDGLNSGVQLRSESKKDYQNGRVHGYQFEIDPSKRAWSGG
IYDEARRNWLYPLTLNPAAKTAFKNNAWNKARIEAIGNSIRTWINGVPCANIWDDMTPSG
FIALQVHAIGNASEEGKTVSWKDIRICTTDVERYQTPETEEAPERNMIANTISPREAKEG
WALLWDGKTNNGWRGAKLNAFPEKGWKMEDGILKVMKSGGAESANGGDIVTTRKYKNFIL
TVDFKITEGANSGVKYFVNPDLNKGEGSAIGCEFQILDDDKHPDAKLGVKGNRKLGSLYD
LIPAPEKKPFNKKDFNTATIIVQDNHVEHWLNGVKLIEYTRNTDMWNALVAYSKYKNWPN
FGNSAEGNILLQDHGDEVWFKNVKIKELK