PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 353399 FitnessBrowser__Btheta:353399 (467 amino acids)

SeqID: 353399 FitnessBrowser__Btheta:353399
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Cytoplasmic                   [matched PS50862: AA_TRNA_LIGASE_II Profile - Cytoplasmic ]
    SCL-BLAST-        Cytoplasmic                   [matched 38258349: Asparaginyl-tRNA synthetase]
    SCL-BLASTe-       Cytoplasmic                   [matched 100% 38258349: Asparaginyl-tRNA synthetase]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            10.00
    Periplasmic            0.00
    CytoplasmicMembrane    0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

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Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Input

>353399 FitnessBrowser__Btheta:353399
MEKIGRTKIVDLLKREDIGAMVNVKGWVRTRRGSKQVNFIALNDGSTINNVQIVVDLANF
DEEMLKLITTGACISVNGVMVESVGSGQKVEVQAKEIEVLGTCDNTYPLQKKGHSMEFLR
EIAHLRPRTNTFGAVFRIRHNMAIAIHKFFHEKGFFYFHTPIITGSDCEGAGQMFQVTTM
NLYDLKKDERGSISYDDDFFGKQASLTVSGQLEGELAATALGAIYTFGPTFRAENSNTPR
HLAEFWMIEPEVAFNDIADNMDLAEEFIKYCVKWALDNCADDVKFLNDMFDKGLIERLQG
VLKDDFVRLPYTDGIKILEDAVAKGHKFEFPVYWGVDLASEHERYLVEEHFKRPVILTDY
PKEIKAFYMKQNEDGKTVRAMDVLFPKIGEIIGGSEREADYNKLMTRIEEMHIPMKDMWW
YLDTRKFGTCPHSGFGLGFERLLLFVTGMSNIRDVIPFPRTPRNADF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory