PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 353951 BT4425 deoxyribose-phosphate aldolase (NCBI ptt file) (238 amino acids)

SeqID: 353951 BT4425 deoxyribose-phosphate aldolase (NCBI ptt file)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1706363: Deoxyribose-phosphate aldolase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>353951 BT4425 deoxyribose-phosphate aldolase (NCBI ptt file)
MEKKNINEVIANLSVEQLAGMIDHTFLKPFGTAENIEKLCAEARQYQFAMVAINPAEVET
CVKLLEGSGVRVGAAIGFPLGQNTVECKAFETRDAIAKGATEIDTVINVRALQKGQTDIV
KKEIEDMVSICKPAGVICKVILETCYLTDEEKETVCRIAKEAGVDFVKTSTGFGTAGANV
HDVALMRRVVGPVIGVKAAGGIRDLDTALALIQVGATRIGTSSGIQIVEAYKELKKGL