PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3606629 FitnessBrowser__Dino:3606629 (443 amino acids)

SeqID: 3606629 FitnessBrowser__Dino:3606629
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599679: |Glu-tRNA(Gln) amidotransferase subunit A|5013974 - 5015428]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3606629 FitnessBrowser__Dino:3606629
MDKSWLTASAAAQGRAIAEGTLDPVALTEAYLDKIASRAESPRIYARTTPDRALSEAMAA
HDRARSQTRHGPLDGVPISWKDLFDTAGVATESGTALLKGRTPDRDAEVLANATAAGLVC
LGKTHLSELAFSGLGLNPITATPPNINDPGAVPGGSSSGAAASVAFGLAAAGIGSDTGGS
VRIPSAWNDLVGLKTTSGLLSLEGAVPLASAFDTVGPLTRTVEDAALLLGALGGTKAPDL
RGATLTGTHLAVLRTGAFEDIRPEPEQAFAAAVARLAEAGAQITELHAPEVDEALALSGV
LFATEAYGIWKDVIEAAPEKMFPPILDRFRGGRDYDAPAYVAGWRKLVELRAVWADRTRA
FDGVLLPTAPTLPPNVDRLLSEKAYFVEENLLALRNTRIGNLMGVCALNLPTGTPSCGLS
IMGQPFGEAALLRLGAAAEAALT