PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3606783 Dshi_0214 3-hydroxybutyryl-CoA dehydrogenase (RefSeq) (291 amino acids)

SeqID: 3606783 Dshi_0214 3-hydroxybutyryl-CoA dehydrogenase (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598786: probable hydroxyacyl-CoA dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3606783 Dshi_0214 3-hydroxybutyryl-CoA dehydrogenase (RefSeq)
MDIKSVGVIGAGQMGNGIAHVFAVAGFDVMMTDISQDALDQAMALIRRNLERQVSREKIS
REDMETAMARITTTLKLPELGQTDLVIEAATERETVKSAIFEDLQPHLKPETILTSNTSS
ISITRLASRTDRPERFMGFHFMNPVPVMQLVELIRGIATDEATYKTLLGVVEKLGKTAAS
AEDFPAFIVNRILMPMINEAVYTLYEGVGSVRSIDESMKLGANHPMGPLELADFIGLDTC
LAIMNVLHDGLADTKYRPCPLLTKYVEAGWLGRKTQRGFYDYRGEVPVPTR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory