PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3606785 Dshi_0216 Electron transfer flavoprotein alpha subunit (RefSeq) (308 amino acids)

SeqID: 3606785 Dshi_0216 Electron transfer flavoprotein alpha subunit (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Periplasmic            2.50
    Extracellular          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3606785 Dshi_0216 Electron transfer flavoprotein alpha subunit (RefSeq)
MAVLCLAEVTDGTLAMDATAKAVTAAGALGDVTLLCVGASAKAAAAEAATISGVAKVLVA
EDPLYGHRLAEPVATLIASLAGDYSHVVAPATTDAKNIMPRVAALLDVMVLSDVTAVVDA
DTFERPIYAGNAIQTVKSADPTKVITFRTSTFDVAPLGGSAPVEEIAAADNPGLSEWVED
KVAESDRPELTSAGVVVSGGRGVGSEDDFALIEKLADKLGAAVGASRAAVDSGYAPNDWQ
VGQTGKVVAPELYVAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQVADYGLVADLFSA
VPELTEKL