PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3607055 FitnessBrowser__Dino:3607055 (600 amino acids)

SeqID: 3607055 FitnessBrowser__Dino:3607055
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 118581: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3607055 FitnessBrowser__Dino:3607055
MRRFSLLTSGIALCAATVAYANDDLITQMDDSKQWAIQTGDYKNHRYSELDEINAENVGD
LQVAWTFSTGVLRGHEGSPLVIGDTMYVHTPFPNIVYALDLSNEGKIIWKYEPKQDPDVI
PVMCCDTVNRGVAYADGKIFLHQADTKVVALDANTGDVLWEVQNGDPSIGETNTATVLPV
KDKVIVGISGGEFGVRGHVTAYDINSGELVWRAYSLGPDDDMLVDPENTTHLGKPIGENS
SLNSWEGDQWMIGGGTTWGWYAADMEENLFYYGTGNPSTWNPAQRPGDNRWTMTVMARDI
DTGMAKWFYQMTPHDEWDYDGVNENILTEQEFDGEMRKLLTRFDRNGLAYTMDRVTGELL
VAEKFDPVVNWTTGVDMDPNSETYGRPQVVAQYSTAQNGEDVNTTGICPAALGTKDQQPA
AYSPKTQVFYVPTNHVCMDYEPFRVSYTAGQPYVGATLSMYPAPDSHGGMGNFIAWDNIN
GEILWSIPEKFSVWSGALATAGDVVFYGTLEGHLKAVHADTGEELYRFKTPSGIIGNVMT
YEHDGRQYVGVLSGVGGWAGIGLAAGLTNPNDGLGAVGGYAALSDYTALGGQLTVFALPN