PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3607106 FitnessBrowser__Dino:3607106 (334 amino acids)

SeqID: 3607106 FitnessBrowser__Dino:3607106
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [11 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 20141728: Ribose transport system permease protein rbsC]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3607106 FitnessBrowser__Dino:3607106
MNTSVKDFTASPEFRLLIIMVFVFGLMSVLSPDRFLSSQNLTSMAFQFPEFAILALAMTI
AMMTGGIDLSVVGIANLSAVVAALILTHFSNAEMPAAQSAIWLAIAITAALCIGAIAGLI
NGSLVAFFGLPPILATLGSGLVFTGFAIAMTGGSAVMGFPDTVALIGNATLAGVPVPLIL
FAVLAFLLHLVLTRTAFGLRVTMYGANPLAALYAAIDINRMLLKVYVIAGMFASVAGLII
MSRANSAKADYGSSYLLLAVLIAVLGGVNPYGGYGRVIGVVLAVLSMQFLSSGLNMLGVS
NFARELIWGALLILVMVINTHAVTALRSSLKPPK