PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3607117 FitnessBrowser__Dino:3607117 (312 amino acids)

SeqID: 3607117 FitnessBrowser__Dino:3607117
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596936: probable oxidoreductase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3607117 FitnessBrowser__Dino:3607117
MTQLTTRSGAPASSLCFGCMQFGGTADKPASAAMFEACRAAGINFFDTAHVYTEGRSETW
LGEMVTDQADDLLIATKVGYVGGSGRANIRTTFDESLRRLGLDAVDILYLHRWDAETPLE
ETFEALADLQSAGRFRYIGVSNFAAWQVMKAQAVAEQFGTRIDILQPMYSLIKRQAEVEI
LPMALSEGIAVAPYSPLGGGLLTGKYAEGGTGRLTENEKYEMRYSMPWMHEAAVALRVLA
AEIGAAPATLAVAWAAAHPGVKAPIISARDVAQLDASLAARDMALPPDLYARITALSQTP
PPATDRLEEALS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory