PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3607221 FitnessBrowser__Dino:3607221 (307 amino acids)

SeqID: 3607221 FitnessBrowser__Dino:3607221
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3607221 FitnessBrowser__Dino:3607221
MKHNTIPGLHHVTAISGPPQDNLDFFTGTLGQRLVKKTVNFDAPDTYHLYYGNETAEPGT
ILTFFPFVDAGPGRAGPGMASAYAYAVPAGRFDGWMARLAEDAIDFNGPVERFGQRVITL
RDPDGAPVELIETDRVAQAPLDGFHSVTLWEADPEPTAKLLTEVFGYTDGGTETGEGIER
LRLVAPGDARGAVVDLIRTDTPSIGRSGAGTIHHVAFRAQDHDTHMGWREKLLGLGHGLT
PVIDRQYFDAIYFREPGGVLFEIATDPPGFATDEPMEALGRKLMLPPQHEPLRDRIERVL
PPLRTAA