PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3607238 Dshi_0653 Prephenate dehydratase (RefSeq) (280 amino acids)

SeqID: 3607238 Dshi_0653 Prephenate dehydratase (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 8134616: P-protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3607238 Dshi_0653 Prephenate dehydratase (RefSeq)
MTLKIAFQGEPGAYSHQACHDARPDAEAVPCRTFEDVFAAVHDGSCDLGMLPVENSTYGR
VADIHRLLPESGLHIIEEAFVRVHINLLAVPGAKLGDIRTAQSHTVLLGQCRSFLRAHDI
QPVTGADTAGSAMHVAQEGNPAHAALASELAGEIYGLDVLARHIEDQDNNTTRFLIMTPE
LDLTRRGSGKMITSFVFQVRNIPAALYKAMGGFATNGVNMTKLESYMVGGSFTATQFYAD
IEGHPDDANVRRALDELGYFTSQLEILGVYPADPRRDETA