PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3607265 Dshi_0680 phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq) (357 amino acids)

SeqID: 3607265 Dshi_0680 phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1171003: Probable phosphoribosylglycinamide formyltransferase 2]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3607265 Dshi_0680 phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq)
MTEPLAPGAVIGMLGGGQLGRMLSMAAARLGFRCHIFEPGAAPPAGQVAEAVTTAGYDDL
DALRRFAEVVDVITYEFENIPTAALDVLEALRPIHPGRRALAVSQDRLTEKEFLRGLGLQ
TAPFAPVDDAAGLEAALAAIGTPAILKTRRLGYDGKGQTRLTAPGDAAEALAAMAGAPAI
LEGFVEFSHEVSVIAARGQDGAVACFDPGENVHRDGILATTTVPARLSHAQRTDAVLLAG
RILNALDYVGVMGVELFVTRGGLIVNEIAPRVHNSGHWTQTGCVIDQFEQHIRAVAGWPL
GDGQRHADVVMENLIGSDMDRVPELAAARDVALHLYGKAETRAGRKMGHANRIMRPG