PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3607284 FitnessBrowser__Dino:3607284 (437 amino acids)

SeqID: 3607284 FitnessBrowser__Dino:3607284
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [13 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3607284 FitnessBrowser__Dino:3607284
MDWFEALALLLGAIVALMALGMPVALAFLAANILGAWVFMGGERGIVQLLNNGLGALTTY
ALVPIPLFLLMGEIFFHTGLGGRMFTAIDRLLGRLPGRLSYVTVLGGTGFSTLSGSSMGS
TALLGSLMVPEMNARGYKSHMSIGPILGTGGLAIIIPPSALAVLLATLAQIDVGALLIAG
VIPGLMLAGFYIATIWIQTRRDPSAAPAYEVAEVSLGAKLGLLLRDVVPMVGVMVVIVSL
MIFGIVTPSEAAAFGALGVIILAAAFRCLTVEALRRSVVGALKVTLMAYMIVFGSATFSQ
LLAFSGASGGLIGWATGFDLDPIWMLLAMFGVLLVLGMFMEQISIMLLTVPIFFPLAQSL
GFDLIWFALIMLLALEISFTTPPFGLLLFVMKGVAPPSTTMREIYLAAIPFIACSLLLVA
LLILFPPLATWLPGLGG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory