PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3607419 Dshi_0833 AMP-dependent synthetase and ligase (RefSeq) (541 amino acids)

SeqID: 3607419 Dshi_0833 AMP-dependent synthetase and ligase (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3607419 Dshi_0833 AMP-dependent synthetase and ligase (RefSeq)
MGWLANETGLDKCAANYVPLTPLSHLARAALVYPDREAVVYGARRFTYAEYHARVSRLAS
ALAGAGIAPGDVVATLLPNIPAMVEAHFGVPACGAVLNTINIRLDVDTVAYILSHGGAKA
VLVDSQFLPLAAEACERLDGPAPLLIEVADDAAGVHALGGYTEYEDFLAGGDPDFPWIMP
RDEWESLALNYTSGTTGRPKGVVYHHRGAYLMTMGTVISWRMVLYPRWLAIVPLFHCNGW
NHSWMMPMLGGTVVCCRDVSAQAIYTAIAENGVTHFGGAPIVLNMIVNAPDAARRPFSHT
VEVFTAGAPPAAATLAAIEELGFNVTQVYGLTETYGHVTECVWNPDWDTLPQAERAAIKA
RQGVALPQMEHITVMDPEMRQVPMDGATTGEVMMRGNSVMKGYYRNPDATAEAFAGGYFH
SGDIALQHPDGYIQIADRAKDIIISGGENISSVEVEGALMHHPAVLLCAVVAKPDPTWGE
VPCAFVELKDGKTAEEAEIIAFARERLAGFKTPKKVVFTELPKTSTGKIQKFELRNRAKA
L

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory