PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3607475 FitnessBrowser__Dino:3607475 (324 amino acids)

SeqID: 3607475 FitnessBrowser__Dino:3607475
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597879: probable serine/threonine dehydratase, degradative[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3607475 FitnessBrowser__Dino:3607475
MKDTIDPAVIPTYDDVVAAHERIKPHIHRTPVLTSSYFNDLVGAELFFKCENFQKAGAFK
VRGACNAVFGLSDALAERGVATHSSGNHALSLSYAAGRRGIPCNVVMPRTAPEAKKAAVR
GYGGIITECEPSTTSREAVFAEVQERTGAEFVHPYNDPRVVAGQGTCSREFMEQTDGLDM
MIAPIGGGGMISGCCLTLSNIAPEVQIIAAEPEQADDAYRSFKAGHIIADDAPVTIADGL
KVPLKDLTWHFVSNHVSDILTASEQEIIDAMKLTWQRMKIVMEPSCAVPLATILKNKDKF
AGKRVGVIVTGGNVDLDKLPWITG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory