PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3607831 FitnessBrowser__Dino:3607831 (635 amino acids)

SeqID: 3607831 FitnessBrowser__Dino:3607831
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3607831 FitnessBrowser__Dino:3607831
MTRKLGVCYYPEHWPEDQWPRDAARMKDAGLTLVRIGEFAWSRLEPSPGDLRFDWLDRAI
SVLAEAGLEVVLGTPTATPPRWMLDRHPDMLAVDARGQPRKFGSRRHYCFSHPGYRAEAA
RIARLLGERYGRDPRIVAWQIDNEYGCHDTTLSYSDAARHGFRDWLAQRYQSTDALNRAW
GNVFWSMAYDRFDQIDLPNLTVTEPNPAHALAFRRYASDMVVAFNRAQVAALRPLTDAPL
IHNYMGRVTEFDHHAVGADLDIASWDSYPMGFLLDRVEAPADHKAAYLRQGDPDFQAFHH
DLYRGVGRDGRWWIMEQQPGPVNWAPWNPAPLPGMVRLWSHEAFAHGAEAVCFFRWRQAP
FAQEQMHAGLLRPDDSPAPGLEEAAALAADLPRLPDVSPSRAPVALVFDYPSQWAWEVQP
QGADFDYFALCFAMYRGLRKLGLSVDILPADPARLAGHDLILVPGLLHLSADMTAYLATT
QAQVLVGPRAGSKTPEMSIALPLGPNLQGLDATVTHVETLPPGAERALQRGGAAERWIEA
VETRAEILEETTEGAPVLIRTGRQHYLAAWPDPEAMGRILRDLCSRAGIQTTDMPEGVRQ
RVHGHHKLVVNYSSEMRVFENDALPPAGLVWKLIP